Variant report

Variant	rs16862858
Chromosome Location	chr3:150529952-150529953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1373418	0.82[EUR][1000 genomes]
rs1444197	1.00[CEU][hapmap]
rs1533711	1.00[CEU][hapmap]
rs16862837	1.00[CEU][hapmap]
rs16862842	1.00[CEU][hapmap]
rs1879420	1.00[CEU][hapmap]
rs1879421	1.00[CEU][hapmap]
rs2014279	1.00[CEU][hapmap]
rs2018246	1.00[CEU][hapmap]
rs2116684	1.00[CEU][hapmap]
rs34348847	1.00[CEU][hapmap]
rs34771595	0.82[EUR][1000 genomes]
rs3851356	1.00[CEU][hapmap]
rs41354246	0.82[EUR][1000 genomes]
rs41372346	1.00[CEU][hapmap]
rs41454348	1.00[CEU][hapmap]
rs57278175	0.82[EUR][1000 genomes]
rs6440697	1.00[CEU][hapmap]
rs6788895	1.00[CEU][hapmap]
rs6789306	1.00[CEU][hapmap]
rs6795396	0.82[EUR][1000 genomes]
rs6805481	1.00[CEU][hapmap]
rs6806197	0.82[EUR][1000 genomes]
rs73003787	0.82[EUR][1000 genomes]
rs73010947	0.82[EUR][1000 genomes]
rs73869297	0.82[EUR][1000 genomes]
rs7615125	1.00[CEU][hapmap]
rs7615292	1.00[CEU][hapmap]
rs7617507	1.00[CEU][hapmap]
rs7628481	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7628776	1.00[CEU][hapmap]
rs7636866	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150524800-150530000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:150524800-150530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:150525200-150530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150525200-150530200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:150529800-150530400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:150529800-150530400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:150529800-150531600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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