Variant report

Variant	rs41454348
Chromosome Location	chr3:150515723-150515724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150479452..150483209-chr3:150511861..150516305,5	MCF-7	breast:
2	chr3:150507241..150509136-chr3:150514867..150517780,2	MCF-7	breast:
3	chr3:150511520..150513316-chr3:150514355..150516169,2	K562	blood:
4	chr3:150488049..150489741-chr3:150515529..150517629,2	K562	blood:
5	chr3:150473033..150475794-chr3:150515641..150518392,2	K562	blood:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1444197	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1533711	1.00[CEU][hapmap]
rs16862837	1.00[CEU][hapmap]
rs16862842	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1838337	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1879420	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1879421	1.00[CEU][hapmap]
rs1915365	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2014279	1.00[CEU][hapmap]
rs2018246	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap]
rs2116684	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2120596	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34348847	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs34771595	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3851356	1.00[CEU][hapmap]
rs41372346	1.00[CEU][hapmap];0.92[GIH][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56840421	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57278175	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57359526	0.83[AMR][1000 genomes]
rs57965761	0.83[AMR][1000 genomes]
rs58403524	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58418105	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60092981	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60523415	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60538652	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61628582	0.83[AMR][1000 genomes]
rs6440697	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs6788895	1.00[CEU][hapmap]
rs6789306	1.00[CEU][hapmap]
rs6795396	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6803830	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6805481	1.00[CEU][hapmap]
rs6806197	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71764080	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72993403	0.81[ASN][1000 genomes]
rs73003787	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73010947	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73010967	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73869297	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7615125	1.00[CEU][hapmap]
rs7615292	1.00[CEU][hapmap]
rs7617507	1.00[CEU][hapmap]
rs7628481	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7628776	1.00[CEU][hapmap]
rs7636866	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150509800-150518400	Weak transcription	Aorta	Aorta
2	chr3:150511600-150518800	Enhancers	Placenta	Placenta
3	chr3:150512200-150516000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150513800-150516000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:150514200-150515800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:150514200-150516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:150515400-150516000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:150515600-150516000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:150515600-150517000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:150515600-150517000	Enhancers	HepG2	liver

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