Variant report

Variant	rs72993403
Chromosome Location	chr3:150509840-150509841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1373418	0.81[EUR][1000 genomes]
rs1444197	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16862842	0.86[EUR][1000 genomes]
rs1814463	0.81[EUR][1000 genomes]
rs1814464	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1838337	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1915365	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2014279	0.81[EUR][1000 genomes]
rs2018246	0.81[EUR][1000 genomes]
rs34348847	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34771595	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3851356	0.81[EUR][1000 genomes]
rs41354246	0.81[EUR][1000 genomes]
rs41372346	0.86[EUR][1000 genomes]
rs41454348	0.81[ASN][1000 genomes]
rs56840421	0.80[ASN][1000 genomes]
rs57278175	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57869178	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58403524	0.86[EUR][1000 genomes]
rs60259684	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60523415	0.86[EUR][1000 genomes]
rs6440696	0.81[EUR][1000 genomes]
rs6440697	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440698	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6769917	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6777178	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6795396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803830	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805481	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6806197	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71764080	0.86[EUR][1000 genomes]
rs73003787	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73003792	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73010941	0.81[EUR][1000 genomes]
rs73010947	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73010956	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73010964	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73010965	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73010967	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73869297	0.93[EUR][1000 genomes]
rs7617507	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7628481	0.93[EUR][1000 genomes]
rs7628776	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv2755835	chr3:150509302-150510302	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150507600-150510200	Enhancers	Placenta	Placenta
2	chr3:150509600-150511600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:150509800-150518400	Weak transcription	Aorta	Aorta

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