Variant report

Variant	rs73010941
Chromosome Location	chr3:150474477-150474478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150474254..150475011-chr3:150562123..150562938,2	MCF-7	breast:
2	chr3:150127920..150130058-chr3:150474228..150477225,3	MCF-7	breast:
3	chr3:150454963..150455600-chr3:150474044..150475005,5	MCF-7	breast:
4	chr3:150454713..150455673-chr3:150473952..150475179,28	MCF-7	breast:
5	chr3:150473969..150474942-chr3:150562035..150562940,4	MCF-7	breast:
6	chr3:150419618..150422904-chr3:150472967..150476084,3	MCF-7	breast:
7	chr3:150454667..150455766-chr3:150473952..150475042,29	MCF-7	breast:
8	chr3:150454836..150455500-chr3:150473999..150475061,5	MCF-7	breast:
9	chr3:150473033..150475794-chr3:150515641..150518392,2	K562	blood:
10	chr3:150320990..150323361-chr3:150472616..150475134,2	K562	blood:
11	chr3:150473969..150474942-chr3:150562139..150562940,2	MCF-7	breast:
12	chr3:150319591..150322535-chr3:150472919..150477532,4	MCF-7	breast:
13	chr3:150433681..150449199-chr3:150473254..150487048,35	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120742	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000196428	Chromatin interaction
ENSG00000244668	Chromatin interaction
ENSG00000163645	Chromatin interaction
ENSG00000240137	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1444197	0.81[EUR][1000 genomes]
rs1533711	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16862837	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16862842	0.81[EUR][1000 genomes]
rs1814463	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1814464	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1838337	0.81[EUR][1000 genomes]
rs1879421	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1879422	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1915365	0.81[EUR][1000 genomes]
rs1991781	0.84[AMR][1000 genomes]
rs2014279	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2018246	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2116685	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2166061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2869479	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34348847	1.00[EUR][1000 genomes]
rs34771595	0.87[EUR][1000 genomes]
rs3851356	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41372346	0.81[EUR][1000 genomes]
rs55899470	0.84[AMR][1000 genomes]
rs57275328	0.84[AMR][1000 genomes]
rs57278175	0.87[EUR][1000 genomes]
rs57824095	0.84[AMR][1000 genomes]
rs57869178	1.00[EUR][1000 genomes]
rs57965761	0.82[ASN][1000 genomes]
rs58403524	0.81[EUR][1000 genomes]
rs60259684	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60523415	0.81[EUR][1000 genomes]
rs60538652	0.83[ASN][1000 genomes]
rs6440696	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440697	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6440698	0.88[EUR][1000 genomes]
rs6769917	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6777178	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6788895	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6795396	0.87[EUR][1000 genomes]
rs6803830	0.81[EUR][1000 genomes]
rs6805481	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6806197	0.87[EUR][1000 genomes]
rs71764080	0.81[EUR][1000 genomes]
rs72993403	0.81[EUR][1000 genomes]
rs73003787	0.87[EUR][1000 genomes]
rs73003792	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73006998	0.84[AMR][1000 genomes]
rs73006999	0.84[AMR][1000 genomes]
rs73008903	0.84[AMR][1000 genomes]
rs73008905	0.84[AMR][1000 genomes]
rs73010930	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73010947	0.87[EUR][1000 genomes]
rs73010956	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010964	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010965	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010967	0.81[EUR][1000 genomes]
rs73869297	0.87[EUR][1000 genomes]
rs7615125	0.84[AMR][1000 genomes]
rs7615292	0.84[AMR][1000 genomes]
rs7617507	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628481	0.87[EUR][1000 genomes]
rs7628776	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150453800-150478000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150454600-150477200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:150456400-150477600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:150456600-150477600	Weak transcription	Fetal Brain Male	brain
5	chr3:150456800-150477400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:150457000-150478800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:150457600-150477600	Weak transcription	HUVEC	blood vessel
8	chr3:150459000-150477600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150460200-150477600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150460400-150475200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:150460400-150477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:150462800-150477000	Weak transcription	Brain Angular Gyrus	brain
13	chr3:150463000-150475400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:150463000-150477800	Weak transcription	NH-A	brain
15	chr3:150463000-150478400	Weak transcription	HSMM	muscle
16	chr3:150463200-150475600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:150463200-150477600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:150464800-150477000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:150465000-150475200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:150466200-150477600	Weak transcription	Aorta	Aorta
21	chr3:150466400-150477800	Weak transcription	Brain Substantia Nigra	brain
22	chr3:150466800-150477600	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:150467000-150477000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:150467000-150477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:150467000-150477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:150467200-150477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:150467400-150477200	Weak transcription	NHDF-Ad	bronchial
28	chr3:150467400-150477600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:150470000-150477000	Weak transcription	A549	lung
30	chr3:150470000-150477600	Weak transcription	Fetal Lung	lung
31	chr3:150470000-150477800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:150470000-150478800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:150470200-150475200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:150470200-150475200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:150470200-150475800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:150470200-150476200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:150470200-150477000	Weak transcription	HMEC	breast
38	chr3:150470200-150477400	Weak transcription	Primary T cells from cord blood	blood
39	chr3:150470200-150477600	Weak transcription	Brain Anterior Caudate	brain
40	chr3:150470200-150477800	Weak transcription	Right Ventricle	heart
41	chr3:150470400-150475600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:150470600-150477000	Weak transcription	Primary B cells from cord blood	blood
43	chr3:150470600-150477800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:150471000-150474600	Weak transcription	Hela-S3	cervix
45	chr3:150471000-150474800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:150471000-150477000	Weak transcription	Colonic Mucosa	Colon
47	chr3:150471200-150474600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:150471200-150475200	Weak transcription	Fetal Thymus	thymus
49	chr3:150471200-150475200	Weak transcription	NHLF	lung
50	chr3:150471200-150476000	Weak transcription	Primary B cells from peripheral blood	blood

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