Variant report

Variant	rs34348847
Chromosome Location	chr3:150501389-150501390
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150478852..150484273-chr3:150500404..150509077,14	MCF-7	breast:
2	chr3:150492633..150496466-chr3:150500350..150503756,3	MCF-7	breast:
3	chr3:150498825..150500781-chr3:150500815..150502754,2	K562	blood:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1444197	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs1533711	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs16862837	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16862842	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1814463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1814464	1.00[EUR][1000 genomes]
rs1838337	0.81[EUR][1000 genomes]
rs1879420	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs1879421	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs1879422	0.82[EUR][1000 genomes]
rs1915365	0.81[EUR][1000 genomes]
rs2014279	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2018246	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2116684	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs2116685	0.82[EUR][1000 genomes]
rs2166061	0.88[EUR][1000 genomes]
rs2869479	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34771595	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3851356	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41372346	1.00[CEU][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41454348	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs56840421	0.84[AMR][1000 genomes]
rs57278175	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57869178	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58403524	0.81[EUR][1000 genomes]
rs60259684	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60523415	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6440696	1.00[EUR][1000 genomes]
rs6440697	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs6440698	0.88[EUR][1000 genomes]
rs6769917	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6777178	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6788895	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs6789306	1.00[CEU][hapmap]
rs6795396	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6803830	0.81[EUR][1000 genomes]
rs6805481	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6806197	0.87[EUR][1000 genomes]
rs71764080	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72993403	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73003787	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73003792	1.00[EUR][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73010930	0.82[EUR][1000 genomes]
rs73010941	1.00[EUR][1000 genomes]
rs73010947	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010956	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73010964	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010965	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010967	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73869297	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7615125	1.00[CEU][hapmap]
rs7615292	1.00[CEU][hapmap]
rs7617507	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7628481	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7628776	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7636866	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150497400-150502600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150500200-150505400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:150500800-150502000	Enhancers	Placenta	Placenta
4	chr3:150501200-150504000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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