Variant report

Variant	rs7628481
Chromosome Location	chr3:150518708-150518709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150518420..150520277-chr3:150522750..150524288,2	MCF-7	breast:
2	chr3:150512366..150515147-chr3:150518097..150520073,2	K562	blood:
3	chr3:150320057..150322115-chr3:150517881..150519684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198843	Chromatin interaction
ENSG00000120742	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1373418	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1444197	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1533711	1.00[CEU][hapmap]
rs16862837	1.00[CEU][hapmap]
rs16862842	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16862858	0.82[EUR][1000 genomes]
rs1814463	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1814464	0.87[EUR][1000 genomes]
rs1838337	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1879420	1.00[CEU][hapmap]
rs1879421	1.00[CEU][hapmap]
rs1915365	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2014279	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2018246	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2116684	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs2869479	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34348847	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34771595	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3851356	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41354246	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41372346	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41454348	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56840421	0.83[AMR][1000 genomes]
rs57278175	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57359526	0.84[AMR][1000 genomes]
rs57869178	0.87[EUR][1000 genomes]
rs57965761	0.84[AMR][1000 genomes]
rs58403524	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58418105	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60259684	0.87[EUR][1000 genomes]
rs60523415	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61628582	0.84[AMR][1000 genomes]
rs6440696	0.87[EUR][1000 genomes]
rs6440697	1.00[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6440698	0.87[EUR][1000 genomes]
rs6769917	0.87[EUR][1000 genomes]
rs6777178	0.87[EUR][1000 genomes]
rs6788895	1.00[CEU][hapmap]
rs6789306	1.00[CEU][hapmap]
rs6795396	1.00[EUR][1000 genomes]
rs6803830	0.93[EUR][1000 genomes]
rs6805481	1.00[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs6806197	1.00[EUR][1000 genomes]
rs71764080	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72993403	0.93[EUR][1000 genomes]
rs73003787	1.00[EUR][1000 genomes]
rs73003792	0.87[EUR][1000 genomes]
rs73005813	0.80[ASN][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73010941	0.87[EUR][1000 genomes]
rs73010947	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73010956	0.87[EUR][1000 genomes]
rs73010964	0.87[EUR][1000 genomes]
rs73010965	0.87[EUR][1000 genomes]
rs73010967	0.93[EUR][1000 genomes]
rs73869297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7615125	1.00[CEU][hapmap]
rs7615292	1.00[CEU][hapmap]
rs7617507	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7628776	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7636866	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150511600-150518800	Enhancers	Placenta	Placenta
2	chr3:150516400-150521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:150516400-150521400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:150516400-150521600	Weak transcription	Gastric	stomach
5	chr3:150516600-150521400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:150516600-150523200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:150516800-150522600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:150517000-150521400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:150517000-150522600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150517800-150522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:150518600-150518800	Enhancers	HUES6 Cell Line	embryonic stem cell

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