Variant report

Variant	rs73010965
Chromosome Location	chr3:150497570-150497571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150480011..150485473-chr3:150496405..150501223,6	K562	blood:
2	chr3:150439162..150440062-chr3:150496902..150497867,2	MCF-7	breast:
3	chr3:150491700..150494169-chr3:150496061..150497673,2	K562	blood:
4	chr3:150478942..150482088-chr3:150496182..150498924,4	MCF-7	breast:
5	chr3:150482246..150483991-chr3:150496557..150499454,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1444197	0.81[EUR][1000 genomes]
rs1533711	0.82[EUR][1000 genomes]
rs16862837	0.82[EUR][1000 genomes]
rs16862842	0.81[EUR][1000 genomes]
rs1814463	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814464	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1838337	0.81[EUR][1000 genomes]
rs1879421	0.82[EUR][1000 genomes]
rs1879422	0.82[EUR][1000 genomes]
rs1915365	0.81[EUR][1000 genomes]
rs2014279	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2018246	1.00[EUR][1000 genomes]
rs2116685	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2166061	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2869479	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34348847	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34771595	0.87[EUR][1000 genomes]
rs3851356	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41372346	0.81[EUR][1000 genomes]
rs55898202	0.84[ASN][1000 genomes]
rs57278175	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57869178	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58403524	0.81[EUR][1000 genomes]
rs60259684	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60523415	0.81[EUR][1000 genomes]
rs6440696	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440697	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6440698	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769917	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6777178	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6788895	0.82[EUR][1000 genomes]
rs6795396	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6803830	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6805481	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6806197	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71764080	0.81[EUR][1000 genomes]
rs72993403	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73003787	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73003792	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73010930	0.82[EUR][1000 genomes]
rs73010941	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73010947	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010956	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73010964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73010967	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73869297	0.87[EUR][1000 genomes]
rs7617507	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7628481	0.87[EUR][1000 genomes]
rs7628776	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv966961	chr3:150490481-150498929	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:150497200-150498200	Enhancers	HepG2	liver
3	chr3:150497400-150502600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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