Variant report

Variant	rs41372346
Chromosome Location	chr3:150489116-150489117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150264158..150266172-chr3:150487535..150489646,2	MCF-7	breast:
2	chr3:150488049..150489741-chr3:150515529..150517629,2	K562	blood:

Variant related genes	Relation type
ENSG00000120742	Chromatin interaction
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1373418	0.81[EUR][1000 genomes]
rs1444197	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1533711	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs16862837	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs16862842	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1814463	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1814464	0.81[EUR][1000 genomes]
rs1838337	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1879420	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes]
rs1879421	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs1915365	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2014279	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2018246	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116684	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2120596	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34348847	1.00[CEU][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34771595	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3851356	1.00[CEU][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41354246	0.81[EUR][1000 genomes]
rs41454348	1.00[CEU][hapmap];0.92[GIH][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56840421	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57278175	0.93[EUR][1000 genomes]
rs57359526	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57869178	0.81[EUR][1000 genomes]
rs57965761	0.86[AMR][1000 genomes]
rs58403524	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58418105	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60092981	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60259684	0.81[EUR][1000 genomes]
rs60523415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60538652	0.91[AMR][1000 genomes]
rs61628582	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6440696	0.81[EUR][1000 genomes]
rs6440697	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs6440698	0.81[EUR][1000 genomes]
rs6769917	0.81[EUR][1000 genomes]
rs6777178	0.81[EUR][1000 genomes]
rs6788895	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6789306	1.00[CEU][hapmap]
rs6795396	0.93[EUR][1000 genomes]
rs6803830	1.00[EUR][1000 genomes]
rs6805481	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs6806197	0.93[EUR][1000 genomes]
rs71764080	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72993403	0.86[EUR][1000 genomes]
rs73003787	0.93[EUR][1000 genomes]
rs73003792	0.81[EUR][1000 genomes]
rs73006998	0.85[EUR][1000 genomes]
rs73010941	0.81[EUR][1000 genomes]
rs73010947	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73010956	0.81[EUR][1000 genomes]
rs73010964	0.81[EUR][1000 genomes]
rs73010965	0.81[EUR][1000 genomes]
rs73010967	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73869297	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7615125	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7615292	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7617507	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs7628481	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7628776	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7636866	1.00[CEU][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150482000-150491600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150482000-150491800	Weak transcription	Gastric	stomach
3	chr3:150482800-150492600	Weak transcription	Spleen	Spleen
4	chr3:150483800-150490800	Weak transcription	Stomach Mucosa	stomach
5	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
6	chr3:150484800-150493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:150488000-150489800	Enhancers	Fetal Muscle Leg	muscle
8	chr3:150488000-150490000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:150488200-150489200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:150488200-150489400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:150488200-150489800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:150488200-150489800	Enhancers	Ovary	ovary
13	chr3:150488400-150489200	Enhancers	NHDF-Ad	bronchial
14	chr3:150488400-150489200	Enhancers	Osteobl	bone
15	chr3:150488400-150489800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:150488400-150489800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:150488600-150489200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:150488600-150489400	Weak transcription	Placenta	Placenta
19	chr3:150488800-150489200	Flanking Active TSS	Liver	Liver
20	chr3:150488800-150489200	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:150488800-150489200	Flanking Active TSS	HepG2	liver
22	chr3:150488800-150489600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:150488800-150489600	Enhancers	Adipose Nuclei	Adipose
24	chr3:150488800-150489800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:150488800-150489800	Enhancers	Pancreas	Pancrea
26	chr3:150488800-150489800	Enhancers	Right Atrium	heart
27	chr3:150489000-150489600	Weak transcription	Left Ventricle	heart

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