Variant report

Variant	rs57869178
Chromosome Location	chr3:150492826-150492827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150492633..150496466-chr3:150500350..150503756,3	MCF-7	breast:
2	chr3:150491700..150494169-chr3:150496061..150497673,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1444197	0.81[EUR][1000 genomes]
rs1533711	0.82[EUR][1000 genomes]
rs16862837	0.82[EUR][1000 genomes]
rs16862842	0.81[EUR][1000 genomes]
rs1814463	1.00[EUR][1000 genomes]
rs1814464	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1838337	0.81[EUR][1000 genomes]
rs1879421	0.82[EUR][1000 genomes]
rs1879422	0.82[EUR][1000 genomes]
rs1915365	0.81[EUR][1000 genomes]
rs2014279	1.00[EUR][1000 genomes]
rs2018246	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2116685	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2166061	0.88[EUR][1000 genomes]
rs2869479	0.94[EUR][1000 genomes]
rs34348847	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34771595	0.87[EUR][1000 genomes]
rs3851356	1.00[EUR][1000 genomes]
rs41372346	0.81[EUR][1000 genomes]
rs56840421	0.82[ASN][1000 genomes]
rs57278175	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58403524	0.81[EUR][1000 genomes]
rs60259684	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60523415	0.81[EUR][1000 genomes]
rs6440696	1.00[EUR][1000 genomes]
rs6440697	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6440698	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6769917	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6777178	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6788895	0.82[EUR][1000 genomes]
rs6795396	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6803830	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6805481	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6806197	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71764080	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72993403	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73003787	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73003792	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73005814	0.82[EUR][1000 genomes]
rs73010930	0.82[EUR][1000 genomes]
rs73010941	1.00[EUR][1000 genomes]
rs73010947	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73010956	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73010964	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73010965	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73010967	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73869297	0.87[EUR][1000 genomes]
rs7617507	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7628481	0.87[EUR][1000 genomes]
rs7628776	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv966961	chr3:150490481-150498929	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:150484800-150493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150489200-150493000	Weak transcription	NHDF-Ad	bronchial
4	chr3:150489200-150493200	Weak transcription	Osteobl	bone
5	chr3:150491800-150493200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:150491800-150497200	Weak transcription	HepG2	liver
7	chr3:150492400-150493600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:150492600-150493000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:150492600-150493000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:150492600-150493200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:150492600-150493200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:150492600-150493200	Enhancers	Placenta	Placenta
13	chr3:150492600-150493600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:150492800-150493000	Enhancers	NH-A	brain
15	chr3:150492800-150493800	Enhancers	Muscle Satellite Cultured Cells	--

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