Variant report

Variant	rs57965761
Chromosome Location	chr3:150473071-150473072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150419618..150422904-chr3:150472967..150476084,3	MCF-7	breast:
2	chr3:150473033..150475794-chr3:150515641..150518392,2	K562	blood:
3	chr3:150320990..150323361-chr3:150472616..150475134,2	K562	blood:
4	chr3:150319591..150322535-chr3:150472919..150477532,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240137	Chromatin interaction
ENSG00000163645	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000198843	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1444197	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16862842	0.86[AMR][1000 genomes]
rs1838337	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1879420	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1915365	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2116684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2120596	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2166061	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34771595	0.81[AMR][1000 genomes]
rs41372346	0.86[AMR][1000 genomes]
rs41454348	0.83[AMR][1000 genomes]
rs57359526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60092981	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60523415	0.86[AMR][1000 genomes]
rs60538652	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61628582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73006998	0.85[EUR][1000 genomes]
rs73010941	0.82[ASN][1000 genomes]
rs73869297	0.84[AMR][1000 genomes]
rs7615125	0.85[EUR][1000 genomes]
rs7615292	0.85[EUR][1000 genomes]
rs7628481	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150453800-150478000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150454600-150477200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:150456400-150477600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:150456600-150477600	Weak transcription	Fetal Brain Male	brain
5	chr3:150456800-150477400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:150457000-150478800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:150457600-150477600	Weak transcription	HUVEC	blood vessel
8	chr3:150459000-150477600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150460200-150477600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150460400-150475200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:150460400-150477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:150461200-150474000	Weak transcription	Dnd41	blood
13	chr3:150462800-150477000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:150463000-150475400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:150463000-150477800	Weak transcription	NH-A	brain
16	chr3:150463000-150478400	Weak transcription	HSMM	muscle
17	chr3:150463200-150475600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:150463200-150477600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:150464800-150477000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:150465000-150475200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:150466200-150477600	Weak transcription	Aorta	Aorta
22	chr3:150466400-150477800	Weak transcription	Brain Substantia Nigra	brain
23	chr3:150466800-150477600	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:150467000-150477000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:150467000-150477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:150467000-150477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:150467200-150473600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:150467200-150473800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:150467200-150477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:150467400-150474000	Weak transcription	Adipose Nuclei	Adipose
31	chr3:150467400-150474000	Weak transcription	Osteobl	bone
32	chr3:150467400-150477200	Weak transcription	NHDF-Ad	bronchial
33	chr3:150467400-150477600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:150468200-150474000	Enhancers	Liver	Liver
35	chr3:150468400-150473200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:150469400-150473200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr3:150470000-150474000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr3:150470000-150477000	Weak transcription	A549	lung
39	chr3:150470000-150477600	Weak transcription	Fetal Lung	lung
40	chr3:150470000-150477800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:150470000-150478800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:150470200-150473800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:150470200-150473800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:150470200-150473800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:150470200-150474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:150470200-150474000	Weak transcription	Small Intestine	intestine
47	chr3:150470200-150475200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:150470200-150475200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:150470200-150475800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:150470200-150476200	Weak transcription	Placenta Amnion	Placenta Amnion

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