Variant report

Variant	rs73005813
Chromosome Location	chr3:150525136-150525137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1373418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41354246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6440699	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6768306	0.89[EUR][1000 genomes]
rs6792791	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73003792	0.80[AMR][1000 genomes]
rs73005814	0.81[AMR][1000 genomes]
rs7628481	0.80[ASN][1000 genomes]
rs7628776	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150521400-150525200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:150522400-150525200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:150522800-150525200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:150524400-150525400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:150524600-150525200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:150524800-150525200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:150524800-150525200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:150524800-150525600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:150524800-150530000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:150524800-150530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:150525000-150525200	Enhancers	Ovary	ovary
12	chr3:150525000-150527000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:150525000-150528400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:150525000-150529800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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