The 2.0 version of rSNPBase

Variant report

Variant rs6441285
Chromosome Location chr3:100212678-100212679
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100210600-100212800 Active TSS HSMM muscle
2 chr3:100210800-100212800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr3:100211000-100214000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr3:100211200-100212800 Active TSS HepG2 liver
5 chr3:100211400-100212800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
6 chr3:100211800-100213600 Weak transcription Spleen Spleen
7 chr3:100211800-100213800 Weak transcription Lung lung
8 chr3:100212000-100212800 Bivalent Enhancer Primary B cells from cord blood blood
9 chr3:100212000-100212800 Enhancers Primary T helper cells PMA-I stimulated --
10 chr3:100212000-100212800 Enhancers Primary Natural Killer cells fromperipheralblood blood
11 chr3:100212000-100212800 Enhancers Primary mononuclear cells fromperipheralblood Blood
12 chr3:100212000-100212800 Enhancers Rectal Mucosa Donor 31 rectum
13 chr3:100212000-100213200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr3:100212000-100215400 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr3:100212000-100215800 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr3:100212200-100212800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr3:100212200-100212800 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr3:100212200-100215600 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr3:100212400-100212800 Enhancers Fetal Muscle Leg muscle
20 chr3:100212400-100213000 Enhancers Fetal Muscle Trunk muscle
21 chr3:100212400-100213000 Weak transcription GM12878-XiMat blood
22 chr3:100212400-100213200 Enhancers Muscle Satellite Cultured Cells --
23 chr3:100212400-100213200 Enhancers Fetal Stomach stomach
24 chr3:100212400-100214000 Weak transcription Duodenum Mucosa Duodenum
25 chr3:100212400-100214400 Weak transcription NHDF-Ad bronchial
26 chr3:100212400-100214800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr3:100212400-100214800 Weak transcription NHEK skin
28 chr3:100212400-100215200 Weak transcription HSMMtube muscle
29 chr3:100212400-100215200 Weak transcription NH-A brain
30 chr3:100212400-100215200 Weak transcription NHLF lung
31 chr3:100212400-100215400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr3:100212400-100215600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr3:100212400-100219200 Weak transcription Aorta Aorta
34 chr3:100212400-100222800 Weak transcription Ovary ovary
35 chr3:100212600-100212800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr3:100212600-100212800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr3:100212600-100212800 Bivalent Enhancer Primary B cells from peripheral blood blood
38 chr3:100212600-100212800 Bivalent Enhancer Primary T cells fromperipheralblood blood
39 chr3:100212600-100212800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
40 chr3:100212600-100212800 Flanking Active TSS Liver Liver
41 chr3:100212600-100212800 Flanking Active TSS Placenta Amnion Placenta Amnion
42 chr3:100212600-100213000 Enhancers Fetal Lung lung
43 chr3:100212600-100213600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr3:100212600-100213600 Weak transcription Brain Anterior Caudate brain
45 chr3:100212600-100214800 Weak transcription HMEC breast
46 chr3:100212600-100215200 Weak transcription Osteobl bone
47 chr3:100212600-100215400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015