Variant report

Variant	rs6443589
Chromosome Location	chr3:178569163-178569164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35432713	0.83[ASN][1000 genomes]
rs4380396	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4381916	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4552328	0.82[EUR][1000 genomes]
rs4618207	0.82[ASN][1000 genomes]
rs4621308	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs6443590	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6443591	0.80[EUR][1000 genomes]
rs6443592	0.81[EUR][1000 genomes]
rs6443593	0.81[EUR][1000 genomes]
rs6443594	0.81[EUR][1000 genomes]
rs6443595	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443596	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7646561	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7653581	0.81[EUR][1000 genomes]
rs9844876	0.85[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511228	chr3:178567609-178569163	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6443589	MAP6D1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178562800-178569200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:178566600-178570200	Enhancers	Fetal Lung	lung
3	chr3:178567200-178575000	Weak transcription	Right Ventricle	heart
4	chr3:178567600-178569800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:178568000-178578200	Weak transcription	HSMM	muscle
6	chr3:178568200-178569200	Enhancers	HSMMtube	muscle
7	chr3:178568200-178569800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:178568200-178577400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:178568600-178570400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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