Variant report

Variant	rs6443597
Chromosome Location	chr3:178574670-178574671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11715386	0.83[EUR][1000 genomes]
rs11719127	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11719680	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11720217	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11927555	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4380396	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs4381916	0.87[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs4597761	0.80[AMR][1000 genomes]
rs56037026	0.83[EUR][1000 genomes]
rs6443595	0.81[ASN][1000 genomes]
rs6769674	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6782172	0.83[EUR][1000 genomes]
rs6805942	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807126	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73185342	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7429900	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7612721	0.92[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646561	0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178567200-178575000	Weak transcription	Right Ventricle	heart
2	chr3:178568000-178578200	Weak transcription	HSMM	muscle
3	chr3:178568200-178577400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:178573800-178575200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:178574400-178574800	Weak transcription	Esophagus	oesophagus
6	chr3:178574400-178575400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:178574600-178575000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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