Variant report
| Variant | rs6782172 |
|---|---|
| Chromosome Location | chr3:178630046-178630047 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11712366 | 0.86[ASN][1000 genomes] |
| rs11715386 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11719127 | 0.96[EUR][1000 genomes] |
| rs11719680 | 0.96[EUR][1000 genomes] |
| rs11720217 | 0.96[EUR][1000 genomes] |
| rs11916133 | 0.97[ASN][1000 genomes] |
| rs11927555 | 0.96[EUR][1000 genomes] |
| rs13095781 | 0.87[ASN][1000 genomes] |
| rs4597761 | 0.87[EUR][1000 genomes] |
| rs56037026 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6443597 | 0.83[EUR][1000 genomes] |
| rs6762274 | 0.80[EUR][1000 genomes] |
| rs6769674 | 0.96[EUR][1000 genomes] |
| rs6782524 | 0.85[ASN][1000 genomes] |
| rs6805942 | 0.84[EUR][1000 genomes] |
| rs6807126 | 0.85[EUR][1000 genomes] |
| rs73185342 | 0.96[EUR][1000 genomes] |
| rs7428095 | 0.87[ASN][1000 genomes] |
| rs7429900 | 0.82[EUR][1000 genomes] |
| rs7433479 | 0.97[ASN][1000 genomes] |
| rs7612721 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998253 | chr3:178622707-179196274 | Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
| 2 | nsv536814 | chr3:178622707-179196274 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:178626400-178640000 | Weak transcription | HSMM | muscle |
