Variant report

Variant	rs6445687
Chromosome Location	chr3:54563549-54563550
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:54557793..54560174-chr3:54563336..54565022,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11130423	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs11707007	0.91[EUR][1000 genomes]
rs11708915	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11711518	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs11714447	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13073425	0.91[EUR][1000 genomes]
rs13089488	0.91[EUR][1000 genomes]
rs17140	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2053862	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs28507696	0.89[EUR][1000 genomes]
rs2884804	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs57828037	0.91[EUR][1000 genomes]
rs58452494	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6414584	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445673	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs6445677	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs6445680	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs6445682	1.00[CEU][hapmap]
rs6445684	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445685	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445690	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6775352	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6789926	1.00[CEU][hapmap]
rs6790503	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795380	1.00[CEU][hapmap]
rs6798952	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372541	0.92[CEU][hapmap];0.86[YRI][hapmap];0.95[EUR][1000 genomes]
rs7372624	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7373390	0.84[YRI][hapmap]
rs7374204	0.92[CEU][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7428361	0.92[EUR][1000 genomes]
rs7431090	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7432845	0.96[CEU][hapmap]
rs7433752	0.82[AMR][1000 genomes]
rs7636708	0.93[CEU][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9816842	0.90[EUR][1000 genomes]
rs9855891	0.82[YRI][hapmap]
rs9874147	0.91[EUR][1000 genomes]
rs9874177	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs9879189	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54561600-54563600	Enhancers	Hela-S3	cervix
2	chr3:54561800-54564000	Weak transcription	Left Ventricle	heart
3	chr3:54561800-54564000	Weak transcription	Psoas Muscle	Psoas
4	chr3:54561800-54564000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:54562800-54564400	Enhancers	Right Atrium	heart
6	chr3:54563000-54564800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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