Variant report

Variant	rs57828037
Chromosome Location	chr3:54567800-54567801
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:54467626..54468675-chr3:54567589..54568828,8	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11130423	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11707007	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708915	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11711518	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11713519	0.94[ASN][1000 genomes]
rs11714447	0.91[EUR][1000 genomes]
rs13073425	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28507696	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58452494	0.90[EUR][1000 genomes]
rs6414584	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6445677	0.92[EUR][1000 genomes]
rs6445680	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6445684	0.91[EUR][1000 genomes]
rs6445685	0.90[EUR][1000 genomes]
rs6445687	0.91[EUR][1000 genomes]
rs6445690	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775352	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790503	0.91[EUR][1000 genomes]
rs6798952	0.91[EUR][1000 genomes]
rs7372541	0.87[EUR][1000 genomes]
rs7372624	0.90[EUR][1000 genomes]
rs7374204	0.90[EUR][1000 genomes]
rs7428361	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7431090	0.90[EUR][1000 genomes]
rs7636708	0.90[EUR][1000 genomes]
rs9816842	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9874147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54566000-54569800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:54566200-54568000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:54566400-54570400	Weak transcription	Psoas Muscle	Psoas

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