Variant report

Variant	rs11713519
Chromosome Location	chr3:54569919-54569920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11708855	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13073425	0.94[ASN][1000 genomes]
rs13089488	0.94[ASN][1000 genomes]
rs17140	0.92[ASN][1000 genomes]
rs17747054	0.92[EUR][1000 genomes]
rs57828037	0.94[ASN][1000 genomes]
rs6445690	0.94[ASN][1000 genomes]
rs6775352	0.92[ASN][1000 genomes]
rs7373217	0.87[EUR][1000 genomes]
rs7373390	0.87[EUR][1000 genomes]
rs9816842	0.89[ASN][1000 genomes]
rs9820301	0.85[EUR][1000 genomes]
rs9874147	0.94[ASN][1000 genomes]
rs9874177	0.94[ASN][1000 genomes]
rs9879189	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54566400-54570400	Weak transcription	Psoas Muscle	Psoas
2	chr3:54569200-54570000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:54569800-54571000	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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