Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11130423	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11706275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11711518	0.92[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11713519	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13082611	0.96[CEU][hapmap]
rs17747001	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs17747054	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28507696	0.87[ASN][1000 genomes]
rs6445677	0.82[CHB][hapmap]
rs6445680	0.91[CHB][hapmap]
rs6775352	0.82[CHB][hapmap]
rs6796049	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs7372453	0.81[EUR][1000 genomes]
rs7373217	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7373390	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7373932	1.00[CEU][hapmap]
rs7428361	0.88[ASN][1000 genomes]
rs7432776	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[YRI][hapmap]
rs7614229	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9820301	0.90[EUR][1000 genomes]
rs9855891	0.96[CEU][hapmap]
rs9879189	0.96[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54524000-54527000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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