Variant report

Variant	rs7373217
Chromosome Location	chr3:54515720-54515721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11706275	0.96[CEU][hapmap]
rs11708855	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs11713519	0.87[EUR][1000 genomes]
rs13082611	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs17747001	0.96[CEU][hapmap];0.93[TSI][hapmap]
rs17747054	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2053862	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2884804	0.86[CHD][hapmap]
rs6789926	0.86[CHB][hapmap]
rs6796049	0.96[CEU][hapmap]
rs7372453	0.88[EUR][1000 genomes]
rs7372541	0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs7373390	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7373932	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap]
rs7374204	0.86[CHD][hapmap]
rs7432776	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs7614229	0.88[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs9820301	0.94[EUR][1000 genomes]
rs9855891	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap]
rs9879189	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998970	chr3:54455794-54516789	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54515400-54516000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:54515400-54516800	Enhancers	Brain Germinal Matrix	brain
3	chr3:54515400-54516800	Enhancers	Fetal Brain Male	brain
4	chr3:54515600-54516000	Active TSS	Fetal Lung	lung

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