Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11130424	0.81[GIH][hapmap]
rs11706275	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap]
rs11708855	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11713519	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13073425	0.80[ASN][1000 genomes]
rs13082611	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs13089488	0.80[ASN][1000 genomes]
rs17140	0.86[CHD][hapmap]
rs17747001	0.81[ASW][hapmap];0.84[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.89[LWK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap]
rs17747054	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes]
rs57828037	0.80[ASN][1000 genomes]
rs6445677	0.83[CHB][hapmap]
rs6445690	0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs6775352	0.83[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs6796049	0.92[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs7373217	0.88[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7373390	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7373932	0.95[CEU][hapmap]
rs7432845	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7614229	0.84[CEU][hapmap];0.83[CHB][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap]
rs9820301	0.87[EUR][1000 genomes]
rs9855891	0.88[CEU][hapmap];0.98[TSI][hapmap]
rs9874147	0.80[ASN][1000 genomes]
rs9874177	0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs9879189	0.88[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7432776	ITIH4	cis	parietal	SCAN
rs7432776	CISH	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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