Variant report

Variant	rs6445755
Chromosome Location	chr3:55918092-55918093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12108171	0.82[ASN][1000 genomes]
rs1458066	1.00[ASN][1000 genomes]
rs17056053	0.82[ASN][1000 genomes]
rs17056061	0.88[ASN][1000 genomes]
rs17056065	1.00[ASN][1000 genomes]
rs17056081	1.00[ASN][1000 genomes]
rs17056090	1.00[ASN][1000 genomes]
rs17056093	0.94[ASN][1000 genomes]
rs17056098	1.00[ASN][1000 genomes]
rs1902861	1.00[ASN][1000 genomes]
rs55673265	0.88[ASN][1000 genomes]
rs55675302	1.00[ASN][1000 genomes]
rs55682897	1.00[ASN][1000 genomes]
rs55724092	0.82[ASN][1000 genomes]
rs55957219	0.88[ASN][1000 genomes]
rs55967115	1.00[ASN][1000 genomes]
rs55971093	1.00[ASN][1000 genomes]
rs57688760	0.88[ASN][1000 genomes]
rs58422259	0.88[ASN][1000 genomes]
rs59611401	0.88[ASN][1000 genomes]
rs62253660	1.00[ASN][1000 genomes]
rs62253661	0.89[ASN][1000 genomes]
rs62253664	0.82[ASN][1000 genomes]
rs62253666	0.82[ASN][1000 genomes]
rs62253667	0.82[ASN][1000 genomes]
rs62255821	0.88[ASN][1000 genomes]
rs62255831	0.88[ASN][1000 genomes]
rs62255832	0.88[ASN][1000 genomes]
rs62255835	1.00[ASN][1000 genomes]
rs62256771	1.00[ASN][1000 genomes]
rs62256772	1.00[ASN][1000 genomes]
rs62256773	1.00[ASN][1000 genomes]
rs62256774	1.00[ASN][1000 genomes]
rs62256778	1.00[ASN][1000 genomes]
rs6763408	1.00[ASN][1000 genomes]
rs6766607	0.88[ASN][1000 genomes]
rs6769408	0.88[ASN][1000 genomes]
rs6790300	0.88[ASN][1000 genomes]
rs73073394	1.00[ASN][1000 genomes]
rs733509	1.00[ASN][1000 genomes]
rs7609626	0.88[ASN][1000 genomes]
rs7617166	0.88[ASN][1000 genomes]
rs7618265	1.00[ASN][1000 genomes]
rs7631779	0.88[ASN][1000 genomes]
rs7631846	0.88[ASN][1000 genomes]
rs7636943	0.88[ASN][1000 genomes]
rs7638901	0.88[ASN][1000 genomes]
rs7639013	0.89[ASN][1000 genomes]
rs7649504	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55913400-55919400	Weak transcription	Fetal Kidney	kidney
4	chr3:55914200-55918600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:55914200-55919200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:55914600-55919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:55914600-55919000	Weak transcription	NHLF	lung
8	chr3:55914800-55918400	Weak transcription	Hela-S3	cervix
9	chr3:55914800-55918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:55914800-55919200	Weak transcription	Fetal Lung	lung
11	chr3:55915400-55918400	Weak transcription	HMEC	breast
12	chr3:55915400-55925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:55916400-55919400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:55916400-55921800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:55916400-55922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:55916800-55919200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:55916800-55919200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:55916800-55919200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:55916800-55919400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:55916800-55919600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:55917000-55922000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:55917600-55919400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:55918000-55919200	Enhancers	NHEK	skin
24	chr3:55918000-55920200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr3:55918000-55921600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links