Variant report
Variant | rs62255821 |
---|---|
Chromosome Location | chr3:55876213-55876214 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1458066 | 0.88[ASN][1000 genomes] |
rs1495370 | 0.87[EUR][1000 genomes] |
rs17055973 | 0.93[EUR][1000 genomes] |
rs17055980 | 0.93[EUR][1000 genomes] |
rs17056024 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17056053 | 0.94[ASN][1000 genomes] |
rs17056061 | 1.00[ASN][1000 genomes] |
rs17056065 | 0.88[ASN][1000 genomes] |
rs17056081 | 0.88[ASN][1000 genomes] |
rs17056090 | 0.88[ASN][1000 genomes] |
rs17056093 | 0.81[ASN][1000 genomes] |
rs17056098 | 0.88[ASN][1000 genomes] |
rs1902861 | 0.88[ASN][1000 genomes] |
rs55673265 | 1.00[ASN][1000 genomes] |
rs55675302 | 0.88[ASN][1000 genomes] |
rs55682897 | 0.88[ASN][1000 genomes] |
rs55694654 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs55957219 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55967115 | 0.88[ASN][1000 genomes] |
rs55971093 | 0.88[ASN][1000 genomes] |
rs56357131 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs57688760 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58422259 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59611401 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59686659 | 0.97[EUR][1000 genomes] |
rs62249347 | 0.93[EUR][1000 genomes] |
rs62249348 | 0.96[EUR][1000 genomes] |
rs62249349 | 0.93[EUR][1000 genomes] |
rs62249353 | 0.97[EUR][1000 genomes] |
rs62251577 | 0.97[EUR][1000 genomes] |
rs62251590 | 0.86[AMR][1000 genomes] |
rs62253660 | 0.88[ASN][1000 genomes] |
rs62255831 | 1.00[ASN][1000 genomes] |
rs62255832 | 1.00[ASN][1000 genomes] |
rs62255835 | 0.88[ASN][1000 genomes] |
rs62256771 | 0.88[ASN][1000 genomes] |
rs62256772 | 0.88[ASN][1000 genomes] |
rs62256773 | 0.88[ASN][1000 genomes] |
rs62256774 | 0.88[ASN][1000 genomes] |
rs62256778 | 0.88[ASN][1000 genomes] |
rs6445755 | 0.88[ASN][1000 genomes] |
rs66539449 | 0.93[EUR][1000 genomes] |
rs6763408 | 0.88[ASN][1000 genomes] |
rs6766607 | 1.00[ASN][1000 genomes] |
rs6769408 | 1.00[ASN][1000 genomes] |
rs6790300 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72877115 | 0.93[EUR][1000 genomes] |
rs73073394 | 0.88[ASN][1000 genomes] |
rs733509 | 0.88[ASN][1000 genomes] |
rs7609626 | 1.00[ASN][1000 genomes] |
rs7617166 | 1.00[ASN][1000 genomes] |
rs7618265 | 0.88[ASN][1000 genomes] |
rs7631779 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7631846 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7636943 | 1.00[ASN][1000 genomes] |
rs7638901 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9820522 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013063 | chr3:55835413-56173713 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:55875600-55877200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
2 | chr3:55875800-55876400 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr3:55875800-55876600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr3:55876200-55876800 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
5 | chr3:55876200-55877200 | Enhancers | Fetal Heart | heart |