Variant report

Variant	rs1495370
Chromosome Location	chr3:55816899-55816900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17055973	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055980	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056024	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55694654	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55957219	0.87[EUR][1000 genomes]
rs56357131	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57688760	0.87[EUR][1000 genomes]
rs58422259	0.81[EUR][1000 genomes]
rs59611401	0.87[EUR][1000 genomes]
rs59686659	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61500900	0.94[ASN][1000 genomes]
rs62249344	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62249347	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62249348	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62249349	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62249353	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251577	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255821	0.87[EUR][1000 genomes]
rs66539449	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72877115	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7609626	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7617166	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7631779	0.87[EUR][1000 genomes]
rs7631846	0.84[EUR][1000 genomes]
rs7636943	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7638901	0.87[EUR][1000 genomes]
rs9815155	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9819181	0.94[ASN][1000 genomes]
rs9820522	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9840584	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55814800-55817400	Enhancers	Spleen	Spleen
2	chr3:55816200-55817200	Enhancers	Pancreas	Pancrea
3	chr3:55816600-55817000	Weak transcription	Gastric	stomach
4	chr3:55816600-55817200	Enhancers	Dnd41	blood
5	chr3:55816800-55817000	Enhancers	Fetal Heart	heart
6	chr3:55816800-55817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:55816800-55819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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