Variant report
| Variant | rs9840584 |
|---|---|
| Chromosome Location | chr3:55804396-55804397 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr3:55803999-55804510 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | RAD21 | chr3:55804172-55804397 | SK-N-SH_RA | brain: | n/a | n/a |
| 3 | RAD21 | chr3:55804041-55804422 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | RAD21 | chr3:55804114-55804465 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | FAM48A | chr3:55804300-55804456 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ERC2 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1495370 | 0.94[ASN][1000 genomes] |
| rs17055973 | 0.94[ASN][1000 genomes] |
| rs17055980 | 0.94[ASN][1000 genomes] |
| rs17056024 | 0.82[ASN][1000 genomes] |
| rs56357131 | 0.82[ASN][1000 genomes] |
| rs59686659 | 0.82[ASN][1000 genomes] |
| rs61500900 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62249344 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62249347 | 0.94[ASN][1000 genomes] |
| rs62249348 | 0.94[ASN][1000 genomes] |
| rs62249349 | 0.82[ASN][1000 genomes] |
| rs62249353 | 0.82[ASN][1000 genomes] |
| rs62251577 | 0.82[ASN][1000 genomes] |
| rs66539449 | 0.82[ASN][1000 genomes] |
| rs72877115 | 0.82[ASN][1000 genomes] |
| rs9815155 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9819181 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9820522 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876814 | chr3:55802749-55860526 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:55804000-55804400 | Enhancers | Ovary | ovary |
