Variant report

Variant	rs62249348
Chromosome Location	chr3:55824868-55824869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1495370	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055973	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055980	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056024	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55694654	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55957219	0.96[EUR][1000 genomes]
rs56357131	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57688760	0.96[EUR][1000 genomes]
rs58422259	0.90[EUR][1000 genomes]
rs59611401	0.96[EUR][1000 genomes]
rs59686659	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61500900	0.94[ASN][1000 genomes]
rs62249344	0.94[ASN][1000 genomes]
rs62249347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62249349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62249353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251577	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255821	0.96[EUR][1000 genomes]
rs66539449	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6790300	0.87[EUR][1000 genomes]
rs72877115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631779	0.96[EUR][1000 genomes]
rs7631846	0.93[EUR][1000 genomes]
rs7638901	0.96[EUR][1000 genomes]
rs9815155	0.94[ASN][1000 genomes]
rs9819181	0.94[ASN][1000 genomes]
rs9820522	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9840584	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55817200-55830600	Weak transcription	Pancreas	Pancrea
2	chr3:55821600-55825200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:55821800-55825000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:55823000-55826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:55823800-55825400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:55824400-55825200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:55824400-55825200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:55824800-55825200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:55824800-55825200	Enhancers	Spleen	Spleen
10	chr3:55824800-55825200	Enhancers	Hela-S3	cervix
11	chr3:55824800-55825400	Enhancers	Muscle Satellite Cultured Cells	--

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