Variant report

Variant	rs58422259
Chromosome Location	chr3:55866296-55866297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1458066	0.88[ASN][1000 genomes]
rs1495370	0.81[EUR][1000 genomes]
rs17055973	0.87[EUR][1000 genomes]
rs17055980	0.93[EUR][1000 genomes]
rs17056024	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17056053	0.94[ASN][1000 genomes]
rs17056061	1.00[ASN][1000 genomes]
rs17056065	0.88[ASN][1000 genomes]
rs17056081	0.88[ASN][1000 genomes]
rs17056090	0.88[ASN][1000 genomes]
rs17056093	0.81[ASN][1000 genomes]
rs17056098	0.88[ASN][1000 genomes]
rs1902861	0.88[ASN][1000 genomes]
rs55673265	1.00[ASN][1000 genomes]
rs55675302	0.88[ASN][1000 genomes]
rs55682897	0.88[ASN][1000 genomes]
rs55694654	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55957219	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967115	0.88[ASN][1000 genomes]
rs55971093	0.88[ASN][1000 genomes]
rs56357131	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57688760	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59611401	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59686659	0.97[EUR][1000 genomes]
rs62249347	0.93[EUR][1000 genomes]
rs62249348	0.90[EUR][1000 genomes]
rs62249349	0.93[EUR][1000 genomes]
rs62249353	0.97[EUR][1000 genomes]
rs62251577	0.97[EUR][1000 genomes]
rs62251590	0.81[AMR][1000 genomes]
rs62253660	0.88[ASN][1000 genomes]
rs62255821	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255831	1.00[ASN][1000 genomes]
rs62255832	1.00[ASN][1000 genomes]
rs62255835	0.88[ASN][1000 genomes]
rs62256771	0.88[ASN][1000 genomes]
rs62256772	0.88[ASN][1000 genomes]
rs62256773	0.88[ASN][1000 genomes]
rs62256774	0.88[ASN][1000 genomes]
rs62256778	0.88[ASN][1000 genomes]
rs6445755	0.88[ASN][1000 genomes]
rs66539449	0.93[EUR][1000 genomes]
rs6763408	0.88[ASN][1000 genomes]
rs6766607	1.00[ASN][1000 genomes]
rs6769408	1.00[ASN][1000 genomes]
rs6790300	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877115	0.93[EUR][1000 genomes]
rs73073394	0.88[ASN][1000 genomes]
rs733509	0.88[ASN][1000 genomes]
rs7609626	1.00[ASN][1000 genomes]
rs7617166	1.00[ASN][1000 genomes]
rs7618265	0.88[ASN][1000 genomes]
rs7631779	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631846	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636943	1.00[ASN][1000 genomes]
rs7638901	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820522	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55865800-55866600	Enhancers	HUES64 Cell Line	embryonic stem cell

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