Variant report

Variant	rs61500900
Chromosome Location	chr3:55809467-55809468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1495370	0.94[ASN][1000 genomes]
rs17055973	0.94[ASN][1000 genomes]
rs17055980	0.94[ASN][1000 genomes]
rs17056024	0.82[ASN][1000 genomes]
rs56357131	0.82[ASN][1000 genomes]
rs59686659	0.82[ASN][1000 genomes]
rs62249344	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62249347	0.94[ASN][1000 genomes]
rs62249348	0.94[ASN][1000 genomes]
rs62249349	0.82[ASN][1000 genomes]
rs62249353	0.82[ASN][1000 genomes]
rs62251577	0.82[ASN][1000 genomes]
rs66539449	0.82[ASN][1000 genomes]
rs72877115	0.82[ASN][1000 genomes]
rs9815155	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820522	0.82[ASN][1000 genomes]
rs9840584	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55807400-55809800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:55809200-55810400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:55809200-55810600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:55809400-55809800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:55809400-55810000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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