Variant report

Variant	rs644877
Chromosome Location	chr6:69477425-69477426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11965496	0.91[EUR][1000 genomes]
rs1357618	0.91[EUR][1000 genomes]
rs1523937	0.91[EUR][1000 genomes]
rs1523941	0.90[EUR][1000 genomes]
rs2204285	0.91[EUR][1000 genomes]
rs4434435	0.88[EUR][1000 genomes]
rs562010	0.80[EUR][1000 genomes]
rs6455299	0.91[EUR][1000 genomes]
rs6919103	0.91[EUR][1000 genomes]
rs6920537	0.91[EUR][1000 genomes]
rs6928142	0.80[EUR][1000 genomes]
rs7738131	0.88[EUR][1000 genomes]
rs7758017	0.90[EUR][1000 genomes]
rs7765583	0.89[EUR][1000 genomes]
rs7769724	0.90[EUR][1000 genomes]
rs7771494	0.91[EUR][1000 genomes]
rs7775093	0.91[EUR][1000 genomes]
rs9294807	0.91[EUR][1000 genomes]
rs9360360	0.91[EUR][1000 genomes]
rs9360361	0.91[EUR][1000 genomes]
rs9446057	0.91[EUR][1000 genomes]
rs9446058	0.91[EUR][1000 genomes]
rs9454616	0.91[EUR][1000 genomes]
rs9454622	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69468400-69480000	Weak transcription	Fetal Lung	lung
3	chr6:69471600-69481600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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