Variant report

Variant	rs7738131
Chromosome Location	chr6:69496952-69496953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1015152	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10945140	0.82[EUR][1000 genomes]
rs11965496	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1357618	0.98[EUR][1000 genomes]
rs1523937	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1523941	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1523948	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2140510	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2140511	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2204285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2223724	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4434435	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs562010	0.83[EUR][1000 genomes]
rs644877	0.88[EUR][1000 genomes]
rs6455299	0.98[EUR][1000 genomes]
rs6919103	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6920537	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6928142	0.83[EUR][1000 genomes]
rs7755356	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7758017	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7765583	0.96[EUR][1000 genomes]
rs7769724	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7771494	0.98[EUR][1000 genomes]
rs7775093	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9294807	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9294810	0.85[EUR][1000 genomes]
rs9294811	0.81[EUR][1000 genomes]
rs9360360	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9360361	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9446057	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9446058	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9454616	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9454621	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9454622	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69489600-69507000	Weak transcription	Fetal Lung	lung

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