Variant report

Variant	rs9360360
Chromosome Location	chr6:69484900-69484901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69473849..69476721-chr6:69483757..69486701,2	K562	blood:
2	chr6:69484056..69486437-chr6:69489948..69492199,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1015152	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10945140	0.84[EUR][1000 genomes]
rs11965496	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1357618	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1357619	0.91[ASN][1000 genomes]
rs1403927	0.91[ASN][1000 genomes]
rs1523937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1523941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523947	1.00[ASN][1000 genomes]
rs1523948	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2140510	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2140511	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177448	0.94[ASN][1000 genomes]
rs2204285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2206834	0.92[ASN][1000 genomes]
rs2223724	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4434435	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs562010	0.85[EUR][1000 genomes]
rs644877	0.91[EUR][1000 genomes]
rs6455298	0.85[ASN][1000 genomes]
rs6455299	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6455302	0.91[ASN][1000 genomes]
rs6455303	0.94[ASN][1000 genomes]
rs6903692	0.81[ASN][1000 genomes]
rs6907661	0.91[ASN][1000 genomes]
rs6911395	0.94[ASN][1000 genomes]
rs6919103	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6920537	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924533	0.97[ASN][1000 genomes]
rs6928142	0.85[EUR][1000 genomes]
rs6929378	0.92[ASN][1000 genomes]
rs7738131	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7751539	0.86[ASN][1000 genomes]
rs7755356	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7758017	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765583	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769724	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7771494	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775093	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294807	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9294810	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294811	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346239	0.97[ASN][1000 genomes]
rs9346240	0.92[ASN][1000 genomes]
rs9346241	0.92[ASN][1000 genomes]
rs9346243	0.92[ASN][1000 genomes]
rs9346245	0.94[ASN][1000 genomes]
rs9346246	0.92[ASN][1000 genomes]
rs9354800	0.86[ASN][1000 genomes]
rs9360361	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9446057	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446058	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9454616	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9454621	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454622	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992784	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69478000-69485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69483400-69485000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69483600-69485200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69483800-69485000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69484000-69485400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:69484400-69485000	Enhancers	Brain Hippocampus Middle	brain
8	chr6:69484400-69485200	Enhancers	Brain Substantia Nigra	brain
9	chr6:69484600-69485600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:69484600-69487600	Enhancers	Brain Anterior Caudate	brain
11	chr6:69484800-69485600	Enhancers	K562	blood
12	chr6:69484800-69485800	Enhancers	Fetal Lung	lung
13	chr6:69484800-69490000	Enhancers	Fetal Brain Female	brain

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