Variant report

Variant	rs6455298
Chromosome Location	chr6:69470321-69470322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69365676..69367185-chr6:69468394..69470988,2	K562	blood:
2	chr6:69368749..69371635-chr6:69469945..69471663,2	K562	blood:
3	chr6:69443233..69444846-chr6:69468097..69471005,2	K562	blood:
4	chr6:69469056..69471849-chr6:69472009..69475947,4	K562	blood:
5	chr6:69367803..69371635-chr6:69469179..69471663,3	K562	blood:
6	chr6:69449408..69453188-chr6:69468664..69472430,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10945140	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1357618	0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs1357619	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1403927	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1523937	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1523941	0.85[ASN][1000 genomes]
rs1523947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1523948	0.82[CEU][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap]
rs1983623	0.85[JPT][hapmap]
rs2024562	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2064389	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2140510	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2177448	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2204285	1.00[JPT][hapmap]
rs2206834	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2206836	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2223724	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2585601	0.86[JPT][hapmap]
rs2585603	0.87[JPT][hapmap]
rs2746128	0.85[JPT][hapmap]
rs2746133	0.87[JPT][hapmap]
rs4708243	0.86[JPT][hapmap]
rs562010	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6455295	1.00[JPT][hapmap]
rs6455296	1.00[JPT][hapmap]
rs6455299	0.82[ASN][1000 genomes]
rs6455302	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6455303	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6903692	0.81[EUR][1000 genomes]
rs6907661	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6911395	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6920537	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6924533	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928142	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6929378	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6932940	1.00[JPT][hapmap]
rs7738291	1.00[JPT][hapmap]
rs7743793	0.83[ASN][1000 genomes]
rs7747313	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7747314	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7751539	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7754795	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7755356	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7769724	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7771494	0.88[ASN][1000 genomes]
rs9294806	1.00[JPT][hapmap]
rs9294807	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9294810	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9294811	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9346239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9346240	0.92[JPT][hapmap]
rs9346243	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9346245	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9346246	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9354796	0.81[ASN][1000 genomes]
rs9360357	0.85[JPT][hapmap]
rs9360360	0.85[ASN][1000 genomes]
rs9360361	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9363963	1.00[JPT][hapmap]
rs9446057	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9446058	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9454611	0.83[ASN][1000 genomes]
rs9454616	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9454621	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9454622	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs992784	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69463400-69470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69467200-69470800	Weak transcription	Fetal Brain Male	brain
3	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69468400-69480000	Weak transcription	Fetal Lung	lung
5	chr6:69469000-69470400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:69470000-69470400	Enhancers	Brain Hippocampus Middle	brain
7	chr6:69470000-69470600	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:69470000-69470800	Enhancers	Brain Angular Gyrus	brain
9	chr6:69470000-69470800	Enhancers	Fetal Brain Female	brain
10	chr6:69470200-69470600	Enhancers	K562	blood
11	chr6:69470200-69470800	Enhancers	Brain Anterior Caudate	brain
12	chr6:69470200-69471000	Enhancers	Brain Substantia Nigra	brain

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