Variant report

Variant	rs7738291
Chromosome Location	chr6:69432067-69432068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10945140	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1357618	1.00[JPT][hapmap]
rs1357619	0.89[JPT][hapmap]
rs1403927	1.00[JPT][hapmap]
rs1523937	1.00[JPT][hapmap]
rs1523947	1.00[JPT][hapmap]
rs1523948	1.00[JPT][hapmap]
rs1983623	0.84[EUR][1000 genomes]
rs2024562	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2064389	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2140510	1.00[JPT][hapmap]
rs2177448	1.00[JPT][hapmap]
rs2204285	1.00[JPT][hapmap]
rs2206834	1.00[JPT][hapmap]
rs2206836	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2223724	1.00[JPT][hapmap]
rs2257875	0.84[EUR][1000 genomes]
rs2585601	0.83[EUR][1000 genomes]
rs2585603	0.84[EUR][1000 genomes]
rs2746128	0.84[EUR][1000 genomes]
rs2746133	0.81[CEU][hapmap]
rs562010	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6455295	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6455296	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6455298	1.00[JPT][hapmap]
rs6455302	1.00[JPT][hapmap]
rs6455303	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6911395	1.00[JPT][hapmap]
rs6920537	1.00[JPT][hapmap]
rs6928142	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6929378	1.00[JPT][hapmap]
rs6932940	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7739996	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7743793	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747313	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747314	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7754795	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755356	1.00[JPT][hapmap]
rs7769724	1.00[JPT][hapmap]
rs9294806	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294807	1.00[JPT][hapmap]
rs9294810	1.00[JPT][hapmap]
rs9294811	1.00[JPT][hapmap]
rs9346239	1.00[JPT][hapmap]
rs9346240	1.00[JPT][hapmap]
rs9346243	1.00[JPT][hapmap]
rs9346245	1.00[JPT][hapmap]
rs9346246	1.00[JPT][hapmap]
rs9354796	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9360361	1.00[JPT][hapmap]
rs9363961	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9363963	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9446057	1.00[JPT][hapmap]
rs9446058	1.00[JPT][hapmap]
rs9454611	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9454616	1.00[JPT][hapmap]
rs9454621	1.00[JPT][hapmap]
rs9454622	1.00[JPT][hapmap]
rs992784	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69428800-69435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69429000-69432800	Weak transcription	Fetal Lung	lung
4	chr6:69429000-69435400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69429000-69435400	Weak transcription	Fetal Brain Female	brain
6	chr6:69429200-69434000	Weak transcription	NHDF-Ad	bronchial
7	chr6:69429200-69435400	Weak transcription	Fetal Brain Male	brain
8	chr6:69430200-69432800	Weak transcription	Fetal Heart	heart
9	chr6:69430200-69432800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links