Variant report

Variant	rs2064389
Chromosome Location	chr6:69425811-69425812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69423760..69426080-chr6:69427890..69430012,2	K562	blood:
2	chr6:69423520..69425895-chr6:69426993..69429775,2	K562	blood:
3	chr6:69398238..69400997-chr6:69423873..69426595,2	K562	blood:
4	chr6:69417656..69421802-chr6:69423180..69427758,4	K562	blood:
5	chr6:69365593..69367286-chr6:69425025..69427900,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10945140	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1357618	0.84[CEU][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap]
rs1357619	0.83[JPT][hapmap]
rs1403927	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1523937	0.84[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs1523947	1.00[JPT][hapmap];0.94[MEX][hapmap]
rs1523948	0.86[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap]
rs1983623	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2024562	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2140510	1.00[JPT][hapmap]
rs2177448	1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2204285	0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap]
rs2206834	1.00[JPT][hapmap]
rs2206836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2223724	0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2257875	1.00[EUR][1000 genomes]
rs2585601	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2585603	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2746128	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2746133	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2880145	0.88[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs4708231	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4708243	0.88[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs562010	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6455295	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455296	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6455298	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6455302	1.00[JPT][hapmap]
rs6455303	1.00[JPT][hapmap]
rs6911395	0.82[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs6920537	0.84[CEU][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs6928142	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929378	1.00[JPT][hapmap]
rs6932940	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738291	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739996	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743793	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7746943	0.88[CEU][hapmap];0.98[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7747313	0.97[ASN][1000 genomes]
rs7747314	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7754795	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755356	1.00[JPT][hapmap]
rs7768160	0.81[EUR][1000 genomes]
rs7769724	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7773117	0.86[EUR][1000 genomes]
rs9294806	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294807	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs9294810	1.00[JPT][hapmap]
rs9294811	1.00[JPT][hapmap]
rs9346239	1.00[JPT][hapmap]
rs9346240	0.86[CHD][hapmap];0.92[JPT][hapmap]
rs9346243	1.00[JPT][hapmap]
rs9346245	1.00[JPT][hapmap]
rs9346246	0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs9354796	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360357	0.87[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs9360361	0.84[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9363961	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9363963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446057	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9446058	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs9454611	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9454616	0.84[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs9454621	0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs9454622	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs992784	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69420200-69428600	Weak transcription	Fetal Brain Female	brain
2	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69421800-69428200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69423600-69428000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:69425600-69428200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69425800-69426600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:69425800-69427800	Weak transcription	Fetal Heart	heart
8	chr6:69425800-69428000	Enhancers	K562	blood
9	chr6:69425800-69428600	Weak transcription	Brain Substantia Nigra	brain

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