Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69411544..69413499-chr6:69432227..69434034,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10945140	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1983623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024562	0.83[EUR][1000 genomes]
rs2064389	1.00[EUR][1000 genomes]
rs2585601	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585603	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880145	0.81[EUR][1000 genomes]
rs4708231	0.81[EUR][1000 genomes]
rs4708243	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs562010	0.88[EUR][1000 genomes]
rs6455295	0.88[EUR][1000 genomes]
rs6455296	0.86[EUR][1000 genomes]
rs6928142	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6932940	0.86[EUR][1000 genomes]
rs7738291	0.84[EUR][1000 genomes]
rs7739996	0.86[EUR][1000 genomes]
rs7743793	0.86[EUR][1000 genomes]
rs7746943	0.81[EUR][1000 genomes]
rs7754795	0.85[EUR][1000 genomes]
rs7768160	0.81[EUR][1000 genomes]
rs7773117	0.86[EUR][1000 genomes]
rs9294806	0.86[EUR][1000 genomes]
rs9354796	0.86[EUR][1000 genomes]
rs9360357	0.81[EUR][1000 genomes]
rs9363961	0.98[EUR][1000 genomes]
rs9363963	0.98[EUR][1000 genomes]
rs9454611	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69407400-69413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69407400-69413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69411400-69414000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69411800-69417600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69412200-69414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:69412200-69418200	Weak transcription	Brain Substantia Nigra	brain

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