Variant report

Variant	rs7743793
Chromosome Location	chr6:69446506-69446507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69444346..69447984-chr6:69448039..69451471,5	K562	blood:
2	chr6:69445033..69447210-chr6:69448039..69450265,2	K562	blood:
3	chr6:69446451..69447989-chr6:69452138..69453692,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945140	1.00[ASN][1000 genomes]
rs1983623	0.86[EUR][1000 genomes]
rs2024562	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064389	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2206836	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257875	0.86[EUR][1000 genomes]
rs2585601	0.84[EUR][1000 genomes]
rs2585603	0.86[EUR][1000 genomes]
rs2746128	0.86[EUR][1000 genomes]
rs562010	0.98[ASN][1000 genomes]
rs6455295	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6455296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6455298	0.83[ASN][1000 genomes]
rs6928142	1.00[ASN][1000 genomes]
rs6932940	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738291	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739996	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747313	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747314	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754795	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9354796	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9363961	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9363963	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9454611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69442600-69447600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69445600-69446600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:69445600-69448000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:69446200-69446800	Enhancers	K562	blood
10	chr6:69446200-69447600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:69446400-69447000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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