Variant report

Variant	rs2585601
Chromosome Location	chr6:69408385-69408386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69407636..69409425-chr6:69411698..69413207,2	K562	blood:
2	chr6:69399688..69402508-chr6:69408019..69410089,2	K562	blood:
3	chr6:69343216..69345870-chr6:69407346..69409250,2	K562	blood:

Variant related genes	Relation type
ENSG00000135298	Chromatin interaction
ENSG00000230910	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10945140	0.89[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs1357618	0.84[CEU][hapmap]
rs1403927	0.84[JPT][hapmap]
rs1523937	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs1523947	0.84[JPT][hapmap]
rs1983623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024562	0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs2064389	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2140510	0.86[JPT][hapmap]
rs2177448	0.84[JPT][hapmap]
rs2204285	0.84[JPT][hapmap]
rs2206834	0.86[JPT][hapmap]
rs2206836	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs2223724	0.84[JPT][hapmap]
rs2257875	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746133	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2880145	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs4708231	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs4708243	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs562010	0.89[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs6455295	0.89[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs6455296	0.90[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs6455298	0.86[JPT][hapmap]
rs6455302	0.86[JPT][hapmap]
rs6455303	0.85[JPT][hapmap]
rs6911395	0.84[JPT][hapmap]
rs6920537	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs6928142	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs6929378	0.86[JPT][hapmap]
rs6932940	0.88[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs7738291	0.83[EUR][1000 genomes]
rs7739996	0.84[EUR][1000 genomes]
rs7743793	0.84[EUR][1000 genomes]
rs7746943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7747314	0.82[CEU][hapmap]
rs7754795	0.89[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7755356	0.86[JPT][hapmap]
rs7768160	0.80[EUR][1000 genomes]
rs7769724	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs7773117	0.85[EUR][1000 genomes]
rs9294806	0.89[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs9294807	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs9294810	0.86[JPT][hapmap]
rs9294811	0.86[JPT][hapmap]
rs9346239	0.84[JPT][hapmap]
rs9346243	0.86[JPT][hapmap]
rs9346245	0.86[JPT][hapmap]
rs9346246	0.84[JPT][hapmap]
rs9354796	0.85[EUR][1000 genomes]
rs9360357	0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs9360361	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs9363961	0.97[EUR][1000 genomes]
rs9363963	1.00[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes]
rs9446057	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs9446058	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs9454609	0.83[YRI][hapmap]
rs9454611	0.84[EUR][1000 genomes]
rs9454616	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs9454621	0.84[JPT][hapmap]
rs9454622	0.85[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69407400-69408400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69407400-69413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69407400-69413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69407600-69411000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69407800-69411200	Weak transcription	Brain Substantia Nigra	brain

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