Variant report

Variant	rs6455302
Chromosome Location	chr6:69501324-69501325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1015152	0.95[ASN][1000 genomes]
rs10945140	1.00[JPT][hapmap]
rs11965496	0.97[ASN][1000 genomes]
rs1357618	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs1357619	0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs1403927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1523941	0.91[ASN][1000 genomes]
rs1523947	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1523948	0.88[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1983623	0.85[JPT][hapmap]
rs2024562	1.00[JPT][hapmap]
rs2064389	1.00[JPT][hapmap]
rs2140510	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2140511	0.97[ASN][1000 genomes]
rs2177448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2204285	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2206834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2206836	1.00[JPT][hapmap]
rs2223724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2585601	0.86[JPT][hapmap]
rs2585603	0.86[JPT][hapmap]
rs2746128	0.85[JPT][hapmap]
rs2746133	0.86[JPT][hapmap]
rs4708243	0.85[JPT][hapmap]
rs562010	1.00[JPT][hapmap]
rs6455295	1.00[JPT][hapmap]
rs6455296	1.00[JPT][hapmap]
rs6455298	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6455299	0.94[ASN][1000 genomes]
rs6455303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6903692	0.84[ASN][1000 genomes]
rs6907661	1.00[ASN][1000 genomes]
rs6911395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6919103	1.00[ASN][1000 genomes]
rs6920537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6924533	0.88[ASN][1000 genomes]
rs6928142	1.00[JPT][hapmap]
rs6929378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6932940	1.00[JPT][hapmap]
rs7738291	1.00[JPT][hapmap]
rs7747314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7751539	0.92[ASN][1000 genomes]
rs7754795	1.00[JPT][hapmap]
rs7755356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7758017	0.97[ASN][1000 genomes]
rs7765583	0.95[ASN][1000 genomes]
rs7769724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7771494	0.88[ASN][1000 genomes]
rs7775093	1.00[ASN][1000 genomes]
rs9294806	1.00[JPT][hapmap]
rs9294807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9294810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9294811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9346239	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346240	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346241	0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9346246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9354800	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360357	0.85[JPT][hapmap]
rs9360360	0.91[ASN][1000 genomes]
rs9360361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9363963	1.00[JPT][hapmap]
rs9446057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9446058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9454616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9454621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9454622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs992784	0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69489600-69507000	Weak transcription	Fetal Lung	lung
2	chr6:69500200-69504600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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