Variant report

Variant	rs2746133
Chromosome Location	chr6:69422753-69422754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10945140	0.85[JPT][hapmap]
rs1403927	0.85[JPT][hapmap]
rs1523937	0.85[JPT][hapmap]
rs1523947	0.85[JPT][hapmap]
rs1523948	0.85[CEU][hapmap]
rs1983623	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024562	0.90[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs2064389	0.89[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs2140510	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs2177448	0.85[JPT][hapmap]
rs2204285	0.85[JPT][hapmap]
rs2206834	0.87[JPT][hapmap]
rs2206836	0.90[CEU][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2223724	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs2257875	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585601	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585603	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746128	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2880145	0.80[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4708231	0.80[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4708243	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs562010	0.85[JPT][hapmap]
rs6455295	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6455296	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6455298	0.87[JPT][hapmap]
rs6455302	0.86[JPT][hapmap]
rs6455303	0.85[JPT][hapmap]
rs6911395	0.85[JPT][hapmap]
rs6920537	0.85[JPT][hapmap]
rs6928142	0.80[CEU][hapmap];0.87[JPT][hapmap]
rs6929378	0.86[JPT][hapmap]
rs6932940	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7738291	0.81[CEU][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7739996	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7743793	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7746943	1.00[CHB][hapmap]
rs7747313	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7747314	0.88[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7754795	0.94[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs7755356	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs7769724	0.87[JPT][hapmap]
rs9294806	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9294807	0.87[JPT][hapmap]
rs9294810	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs9294811	0.87[JPT][hapmap]
rs9346239	0.85[JPT][hapmap]
rs9346243	0.87[JPT][hapmap]
rs9346245	0.87[JPT][hapmap]
rs9346246	0.85[JPT][hapmap]
rs9354796	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9360357	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs9360361	0.85[JPT][hapmap]
rs9363961	0.84[EUR][1000 genomes]
rs9363963	0.89[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs9446057	0.85[JPT][hapmap]
rs9446058	0.86[JPT][hapmap]
rs9454611	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9454616	0.85[JPT][hapmap]
rs9454621	0.85[JPT][hapmap]
rs9454622	0.87[JPT][hapmap]
rs992784	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69420200-69428600	Weak transcription	Fetal Brain Female	brain
2	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69421800-69423200	Enhancers	Brain Substantia Nigra	brain
4	chr6:69421800-69424800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69421800-69425800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:69421800-69428200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69422000-69425800	Weak transcription	K562	blood
8	chr6:69422400-69423200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69422400-69424600	Weak transcription	Fetal Heart	heart

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