Variant report

Variant	rs7747313
Chromosome Location	chr6:69461779-69461780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69451157..69453951-chr6:69460011..69462133,3	K562	blood:
2	chr6:69460973..69463599-chr6:69463618..69467509,4	K562	blood:
3	chr6:69457273..69460915-chr6:69461599..69464794,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1015152	0.86[EUR][1000 genomes]
rs10945140	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523948	0.86[EUR][1000 genomes]
rs2024562	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064389	0.97[ASN][1000 genomes]
rs2140510	0.86[EUR][1000 genomes]
rs2140511	0.86[EUR][1000 genomes]
rs2206836	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223724	0.86[EUR][1000 genomes]
rs562010	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455295	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6455296	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6455298	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6928142	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932940	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738291	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739996	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743793	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754795	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755356	0.86[EUR][1000 genomes]
rs9294806	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9294810	0.86[EUR][1000 genomes]
rs9354796	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9363961	0.89[ASN][1000 genomes]
rs9363963	0.95[ASN][1000 genomes]
rs9454611	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454621	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
2	chr6:69457400-69466000	Weak transcription	Fetal Brain Female	brain
3	chr6:69457400-69466400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69457600-69464000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:69461000-69464600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:69461000-69465400	Weak transcription	Brain Angular Gyrus	brain
7	chr6:69461200-69465000	Weak transcription	Brain Cingulate Gyrus	brain

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