Variant report

Variant	rs6455296
Chromosome Location	chr6:69436815-69436816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69428185..69430149-chr6:69436142..69437737,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10945140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1357618	0.92[JPT][hapmap]
rs1403927	1.00[JPT][hapmap]
rs1523937	1.00[JPT][hapmap]
rs1523947	1.00[JPT][hapmap]
rs1523948	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs1983623	0.89[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs2024562	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2140510	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs2177448	1.00[JPT][hapmap]
rs2204285	1.00[JPT][hapmap]
rs2206834	1.00[JPT][hapmap]
rs2206836	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2223724	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2257875	0.86[EUR][1000 genomes]
rs2585601	0.90[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs2585603	0.90[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs2746128	0.89[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs2746133	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs2880145	0.80[CEU][hapmap]
rs4708231	0.80[CEU][hapmap]
rs4708243	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs562010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6455295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455298	1.00[JPT][hapmap]
rs6455302	1.00[JPT][hapmap]
rs6455303	1.00[JPT][hapmap]
rs6911395	1.00[JPT][hapmap]
rs6920537	1.00[JPT][hapmap]
rs6928142	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6929378	1.00[JPT][hapmap]
rs6932940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738291	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747313	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747314	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754795	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755356	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7769724	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9294806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294807	1.00[JPT][hapmap]
rs9294810	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs9294811	1.00[JPT][hapmap]
rs9346239	1.00[JPT][hapmap]
rs9346240	0.92[JPT][hapmap]
rs9346243	1.00[JPT][hapmap]
rs9346245	1.00[JPT][hapmap]
rs9346246	1.00[JPT][hapmap]
rs9354796	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360357	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs9360361	1.00[JPT][hapmap]
rs9363961	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9363963	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446057	1.00[JPT][hapmap]
rs9446058	1.00[JPT][hapmap]
rs9454611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454616	1.00[JPT][hapmap]
rs9454621	1.00[JPT][hapmap]
rs9454622	1.00[JPT][hapmap]
rs992784	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69432800-69437000	Enhancers	Fetal Lung	lung
2	chr6:69435200-69439200	Enhancers	Brain Hippocampus Middle	brain
3	chr6:69435200-69439200	Enhancers	Brain Substantia Nigra	brain
4	chr6:69435400-69437000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69435400-69437000	Enhancers	Fetal Brain Male	brain
6	chr6:69435400-69437200	Enhancers	Brain Angular Gyrus	brain
7	chr6:69435400-69439200	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:69436200-69439200	Enhancers	Liver	Liver
9	chr6:69436400-69437000	Enhancers	K562	blood
10	chr6:69436400-69439400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69436600-69437000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:69436600-69439000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:69436600-69444200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69436800-69440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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