Variant report

Variant	rs2880145
Chromosome Location	chr6:69359708-69359709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69358462..69361443-chr6:69362578..69364928,4	K562	blood:
2	chr6:69355292..69359376-chr6:69359699..69365505,6	K562	blood:
3	chr6:69358126..69360054-chr6:69377146..69378782,2	K562	blood:
4	chr6:69346849..69353858-chr6:69356877..69365508,11	K562	blood:
5	chr6:69359484..69364655-chr6:69364836..69370262,9	K562	blood:
6	chr6:69349831..69353456-chr6:69358636..69362534,5	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1983623	0.88[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs2064389	0.88[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2257875	0.81[EUR][1000 genomes]
rs2585601	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2585603	0.89[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs2746128	0.88[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs2746133	0.80[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4708197	0.82[EUR][1000 genomes]
rs4708231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4708243	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes]
rs6455296	0.80[CEU][hapmap]
rs6928142	0.80[CEU][hapmap]
rs7746943	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747314	0.81[JPT][hapmap]
rs7752462	0.95[EUR][1000 genomes]
rs7768160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7773117	0.84[EUR][1000 genomes]
rs9351732	0.81[EUR][1000 genomes]
rs9360357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9363961	0.83[EUR][1000 genomes]
rs9363963	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9454609	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
2	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
5	chr6:69358000-69360200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69359000-69360400	Enhancers	Brain Substantia Nigra	brain
7	chr6:69359000-69361000	Enhancers	Brain Hippocampus Middle	brain
8	chr6:69359400-69360000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:69359600-69359800	Enhancers	Brain Anterior Caudate	brain
10	chr6:69359600-69359800	Enhancers	Pancreas	Pancrea
11	chr6:69359600-69360000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:69359600-69360000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69359600-69360000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:69359600-69360000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:69359600-69360000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:69359600-69360000	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr6:69359600-69360000	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:69359600-69360000	Enhancers	Fetal Brain Male	brain
19	chr6:69359600-69360000	Enhancers	K562	blood
20	chr6:69359600-69360200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:69359600-69360200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:69359600-69360200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr6:69359600-69361600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:69359600-69365400	Enhancers	Fetal Lung	lung
25	chr6:69359600-69365800	Enhancers	Cortex derived primary cultured neurospheres	brain

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