Variant report

Variant	rs7752462
Chromosome Location	chr6:69351924-69351925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2880145	0.95[EUR][1000 genomes]
rs4708197	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4708231	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4708243	0.86[EUR][1000 genomes]
rs7746943	0.95[EUR][1000 genomes]
rs7768160	0.95[EUR][1000 genomes]
rs7773117	0.81[EUR][1000 genomes]
rs9351732	0.90[AFR][1000 genomes]
rs9360357	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69343200-69352000	Active TSS	Brain Anterior Caudate	brain
2	chr6:69348600-69352800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:69350000-69352200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
5	chr6:69350800-69352800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
7	chr6:69351000-69352200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:69351000-69353800	Enhancers	Brain Substantia Nigra	brain
9	chr6:69351200-69353000	Weak transcription	K562	blood
10	chr6:69351400-69352000	Enhancers	Brain Angular Gyrus	brain
11	chr6:69351400-69352200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:69351400-69352800	Weak transcription	Fetal Brain Male	brain
13	chr6:69351400-69353000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:69351600-69352000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:69351600-69352800	Weak transcription	Fetal Lung	lung
16	chr6:69351600-69353000	Enhancers	Brain Hippocampus Middle	brain
17	chr6:69351600-69353600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:69351800-69352200	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:69351800-69352400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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