Variant report

Variant	rs4708243
Chromosome Location	chr6:69372294-69372295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69351017..69353999-chr6:69369365..69372357,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10945140	0.83[JPT][hapmap]
rs1403927	0.83[JPT][hapmap]
rs1523937	0.83[JPT][hapmap]
rs1523947	0.83[JPT][hapmap]
rs1983623	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024562	0.83[JPT][hapmap]
rs2064389	0.88[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs2140510	0.85[JPT][hapmap]
rs2177448	0.83[JPT][hapmap]
rs2204285	0.83[JPT][hapmap]
rs2206834	0.86[JPT][hapmap]
rs2206836	0.86[JPT][hapmap]
rs2223724	0.83[JPT][hapmap]
rs2257875	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585601	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585603	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2746128	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2746133	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs2880145	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes]
rs4708231	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs562010	0.83[JPT][hapmap]
rs6455295	0.83[JPT][hapmap]
rs6455296	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs6455298	0.86[JPT][hapmap]
rs6455302	0.85[JPT][hapmap]
rs6455303	0.84[JPT][hapmap]
rs6911395	0.83[JPT][hapmap]
rs6920537	0.83[JPT][hapmap]
rs6928142	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs6929378	0.85[JPT][hapmap]
rs6932940	0.82[JPT][hapmap]
rs7746943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes]
rs7747314	0.90[JPT][hapmap]
rs7752462	0.86[EUR][1000 genomes]
rs7754795	0.85[JPT][hapmap]
rs7755356	0.86[JPT][hapmap]
rs7768160	0.91[EUR][1000 genomes]
rs7769724	0.86[JPT][hapmap]
rs7773117	0.89[EUR][1000 genomes]
rs9294806	0.83[JPT][hapmap]
rs9294807	0.86[JPT][hapmap]
rs9294810	0.86[JPT][hapmap]
rs9294811	0.86[JPT][hapmap]
rs9346239	0.83[JPT][hapmap]
rs9346243	0.86[JPT][hapmap]
rs9346245	0.86[JPT][hapmap]
rs9346246	0.83[JPT][hapmap]
rs9360357	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9360361	0.83[JPT][hapmap]
rs9363961	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9363963	0.88[CEU][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs9446057	0.83[JPT][hapmap]
rs9446058	0.85[JPT][hapmap]
rs9454616	0.83[JPT][hapmap]
rs9454621	0.83[JPT][hapmap]
rs9454622	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3350874	chr6:69370256-69372654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69368400-69377800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69368600-69376000	Weak transcription	K562	blood
7	chr6:69371800-69372400	Enhancers	Brain Angular Gyrus	brain
8	chr6:69372000-69374400	Weak transcription	Fetal Lung	lung

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