Variant report

Variant	rs9363961
Chromosome Location	chr6:69375605-69375606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69369127..69370671-chr6:69372780..69375655,2	K562	blood:
2	chr6:69374562..69377202-chr6:69385965..69388256,2	K562	blood:
3	chr6:68749500..68752266-chr6:69373788..69375882,2	K562	blood:
4	chr6:69373114..69378102-chr6:69378626..69382768,5	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10945140	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983623	0.98[EUR][1000 genomes]
rs2024562	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2064389	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2206836	0.89[ASN][1000 genomes]
rs2257875	0.98[EUR][1000 genomes]
rs2585601	0.97[EUR][1000 genomes]
rs2585603	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2746128	0.98[EUR][1000 genomes]
rs2880145	0.83[EUR][1000 genomes]
rs4708231	0.82[EUR][1000 genomes]
rs4708243	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs562010	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6455295	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6455296	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928142	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6932940	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7738291	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7739996	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743793	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746943	0.83[EUR][1000 genomes]
rs7747313	0.89[ASN][1000 genomes]
rs7747314	0.89[ASN][1000 genomes]
rs7754795	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768160	0.83[EUR][1000 genomes]
rs7773117	0.85[EUR][1000 genomes]
rs9294806	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9354796	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360357	0.83[EUR][1000 genomes]
rs9363963	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454611	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69368400-69377800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69368600-69376000	Weak transcription	K562	blood
7	chr6:69372400-69376200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:69374800-69382800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69375000-69382800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links