Variant report

Variant	rs9454609
Chromosome Location	chr6:69396783-69396784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2585601	0.83[YRI][hapmap]
rs2880145	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69383200-69400000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69388400-69399800	Weak transcription	Fetal Lung	lung
6	chr6:69389600-69399800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:69393400-69399800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:69396200-69397000	Enhancers	K562	blood
9	chr6:69396600-69398800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:69396600-69399800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:69396600-69399800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:69396600-69399800	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links