Variant report

Variant	rs992784
Chromosome Location	chr6:69494786-69494787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69488300..69490179-chr6:69492286..69495172,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1015152	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945140	0.92[JPT][hapmap]
rs11965496	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1357618	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1357619	0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403927	0.88[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1523937	0.88[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1523941	0.91[ASN][1000 genomes]
rs1523947	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1523948	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024562	0.92[JPT][hapmap]
rs2064389	0.92[JPT][hapmap]
rs2140510	0.83[CEU][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2140511	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177448	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2204285	0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs2206834	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206836	0.93[JPT][hapmap]
rs2223724	0.88[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2585603	0.81[JPT][hapmap]
rs2746133	0.81[JPT][hapmap]
rs4434435	0.80[AMR][1000 genomes]
rs562010	0.92[JPT][hapmap]
rs6455295	0.92[JPT][hapmap]
rs6455296	0.93[JPT][hapmap]
rs6455298	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6455299	0.93[ASN][1000 genomes]
rs6455302	0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs6455303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903692	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6907661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911395	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6919103	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6920537	0.88[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6924533	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928142	0.93[JPT][hapmap]
rs6929378	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932940	0.91[JPT][hapmap]
rs7738291	1.00[JPT][hapmap]
rs7747314	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7751539	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754795	0.93[JPT][hapmap]
rs7755356	0.83[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758017	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7765583	0.95[ASN][1000 genomes]
rs7769724	0.88[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs7771494	0.88[ASN][1000 genomes]
rs7775093	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9294806	0.92[JPT][hapmap]
rs9294807	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9294810	0.83[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294811	0.91[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9346239	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs9346240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9346241	0.98[ASN][1000 genomes]
rs9346243	0.88[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs9346245	0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs9346246	0.88[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs9354800	0.92[ASN][1000 genomes]
rs9360360	0.91[ASN][1000 genomes]
rs9360361	0.88[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9363963	0.92[JPT][hapmap]
rs9446057	1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9446058	0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9454616	0.88[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs9454621	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9454622	0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69489600-69507000	Weak transcription	Fetal Lung	lung

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