Variant report

Variant	rs6453615
Chromosome Location	chr6:73717179-73717180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11963228	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935511	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1935512	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1935513	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4397191	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6453617	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6918396	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6919016	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7747368	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342991	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351961	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9359011	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73705600-73717400	Weak transcription	Aorta	Aorta
2	chr6:73710000-73740000	Weak transcription	HMEC	breast
3	chr6:73710600-73717400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73713400-73717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:73714800-73723200	Weak transcription	GM12878-XiMat	blood
6	chr6:73715200-73717200	Weak transcription	Dnd41	blood
7	chr6:73715400-73719000	Strong transcription	Primary B cells from cord blood	blood
8	chr6:73715800-73717200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:73715800-73718400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:73716400-73717800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr6:73716600-73717800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr6:73716600-73718800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:73716800-73717600	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr6:73717000-73717600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:73717000-73717800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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