Variant report

Variant	rs7747368
Chromosome Location	chr6:73717568-73717569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11963228	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935511	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1935512	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1935513	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4397191	0.83[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6453615	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453617	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6918396	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6919016	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9342991	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351961	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9359011	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73714800-73723200	Weak transcription	GM12878-XiMat	blood
3	chr6:73715400-73719000	Strong transcription	Primary B cells from cord blood	blood
4	chr6:73715800-73718400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:73716400-73717800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr6:73716600-73717800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr6:73716600-73718800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73716800-73717600	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr6:73717000-73717600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:73717000-73717800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:73717200-73717600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:73717200-73717600	Strong transcription	Dnd41	blood
13	chr6:73717400-73717600	ZNF genes & repeats	Aorta	Aorta
14	chr6:73717400-73718600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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