Variant report

Variant	rs9351961
Chromosome Location	chr6:73678927-73678928
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11963228	0.86[CHD][hapmap]
rs1935511	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935512	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6453615	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7747368	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9342991	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9359011	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73666200-73686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73673000-73688000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:73674200-73683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73675600-73679000	Weak transcription	Fetal Heart	heart
6	chr6:73676600-73687000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:73676800-73679000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:73677000-73679000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:73677000-73682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73678400-73679200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73678400-73679400	Enhancers	HUVEC	blood vessel
12	chr6:73678400-73679600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:73678600-73679000	Enhancers	HSMMtube	muscle
14	chr6:73678600-73679200	Enhancers	HSMM	muscle
15	chr6:73678800-73679200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:73678800-73679400	Enhancers	HMEC	breast
17	chr6:73678800-73679400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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